Protein Details: Gamma-aminobutyric acid receptor subunit rho-1

Protein ID

ICDB_Pro_0573

Protein Name

Gamma-aminobutyric acid receptor subunit rho-1

Gene Name

Gabrr1

Organism

Rattus norvegicus (Rat)

Length

480 amino acids

AlphaFoldDB

AF-P50572-F1-model_v4.pdb

Function

Rho subunit of the pentameric ligand-gated chloride channels responsible for mediating the effects of gamma-aminobutyric acid (GABA); the major inhibitory neurotransmitter in the brain. Rho-containing GABA-gated chloride channels are a subclass of GABA(A) receptors (GABAARs) entirely composed of rho subunits; where GABA molecules bind at the rho intersubunit interfaces (By similarity). When activated by GABA; rho-GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient. Rho-1 subunits are primarily expressed in retina where rho-1-containing GABAARs may play a role in retinal neurotransmission (By similarity). Rho-1 GABAARs are also involved in neuronal tonic (extrasynaptic) and phasic (synaptic) transmission in the Purkinje neurons of the cerebellum (By similarity). Rho-1 GABAARs may also contribute to the regulation of glial development in the cerebellum by controlling extrasynaptic transmission (By similarity).

Sequence

MLAVRNMKFGIFLLWWGWVLAAESTVHWPGREVHEPSKKGSRPQRQRRGAHDDAHKQGSPILKRSSDITKSPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKERKLREKISCTCGLPQPRGVMLDSSYSDGEVNDLGGYMPENGEKPDRMMVQLTLASERGSPQRKSQRGSYVSMRINTHAIDKYSRIIFPAAYILFNLIYWSIFS

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

BINDING 126; /ligand="4-aminobutanoate": "ligand shared between two neighboring rho subunits"; /note="in chain A"; BINDING 190; /ligand="4-aminobutanoate": "ligand shared between two neighboring rho subunits"; /note="in chain A"; BINDING 218; /ligand="4-aminobutanoate": "ligand shared between two neighboring rho subunits"; /note="in chain B";

Disease

Location

DOI ID

10.1073/pnas.92.25.11756; 10.1097/00001756-199608120-00030; 10.1074/jbc.m205162200

RefSeq

Feature